Trans-ABySS 1.5.1 (Jul 22, 2014)
Support strand-specific RNAseq data. Major improvement in assembly quality; both rare and common transcripts can be assembled well with "small" k-mer sizes (ie. 25~32).
For additional information about this project, please visit the overview page .
Available downloads
Release Notes
| State | Final release |
|---|---|
| License | BCCA (academic use) |
| Release Manager | Ka Ming Nip |
+ Support strand-specific RNAseq data.
+ Major improvement in assembly quality; both rare and common transcripts can be assembled well with "small" k-mer sizes (ie. 25~32).
+ Package has been divided into 3 main applications:
(1) transabyss - RNAseq assembler at a single k-mer size
(2) transabyss-merge - merge multiple assemblies from (1)
(3) transabyss-analyze - analyze an assembly, either from (1) or (2), for structural variants and novel splice variants
- Analysis results are NOT screened against dbSNP, DGV, etc. anymore.
- Genome assembly and analyses pipeline has been retracted.
- Support for SGE qmake has been retracted.
More information on this release:
README.txt or https://github.com/bcgsc/transabyss/releases/tag/1.5.1
TUTORIAL.txt or https://github.com/bcgsc/transabyss/wiki
Please use our Google Group trans-abyss@googlegroups.com for discussions and support. Existing topics can be viewed at https://groups.google.com/d/forum/trans-abyss
You may also create issues on our GitHub repository at https://github.com/bcgsc/transabyss/issues
