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ChopStitch
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by
Hamid Mohamadi
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published
Feb 02, 2017
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last modified
Jan 05, 2018 11:54 AM
Exon annotation and splice graph reconstruction using transcriptome assembly and whole genome sequencing data
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Bioinformatics
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GSC Software Centre
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ChopStitch 0.0.1
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by
Hamid Mohamadi
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published
Feb 02, 2017
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last modified
Jan 05, 2018 11:39 AM
See ChopStitch GitHub page for details.
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ChopStitch 1.0.0
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by
Hamid Mohamadi
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published
Jan 05, 2018
Fixing minor bugs.
Improving performance.
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ChopStitch-0.0.1
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by
Hamid Mohamadi
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last modified
Jan 05, 2018 11:42 AM
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ChopStitch 0.0.1
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ChopStitch-1.0.0
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by
Hamid Mohamadi
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last modified
Jan 05, 2018 11:49 AM
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ChopStitch 1.0.0
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DIDA
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by
Hamid Mohamadi
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published
Apr 11, 2014
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last modified
May 26, 2016 10:12 AM
DIDA is a novel framework that performs the large-scale alignment tasks by distributing the indexing and alignment stages into smaller subtasks over a cluster of compute nodes.
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GSC Software Centre
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DIDA 0.1.1 (Unreleased)
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by
Hamid Mohamadi
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last modified
Jun 17, 2014 05:53 PM
0.1.1
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DIDA 0.1.2
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by
Hamid Mohamadi
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published
Jul 10, 2014
New merging step compatible with BWA, Bowtie, Novoalign, and ABySS-map with different merging strategies.
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DIDA 0.1.3
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by
Hamid Mohamadi
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published
Dec 13, 2014
Adding wrapper and fully streamlined versions of DIDA.
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DIDA 1.0.0
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by
Hamid Mohamadi
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published
Feb 25, 2015
dida-wrapper, dida-mpi, and the batch versions are optimized. Fixed many portability issues and bugs, and improved some error messages.
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