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PAVFinder 0.4.0
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by
Readman Chiu
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published
May 18, 2017
Merge PAVFinder_transcriptome
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PAVFinder v0.4.0
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by
Readman Chiu
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last modified
May 18, 2017 12:32 PM
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PAVFinder 0.4.0
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Releases
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by
Readman Chiu
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last modified
Aug 11, 2015 04:34 PM
Existing and upcoming releases for this project.
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PAVFinder
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PAVFinder
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by
Readman Chiu
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published
Aug 11, 2015
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last modified
Feb 05, 2016 09:59 AM
Structural variant caller on sequence assembly
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Bioinformatics
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PAVFinder 0.2.0
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by
Readman Chiu
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published
Aug 11, 2015
Initial release
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PAVFinder v0.2.0
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by
Readman Chiu
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last modified
Aug 11, 2015 05:00 PM
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PAVFinder 0.2.0
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Trans-ABySS 1.3.5
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by
Readman Chiu
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published
Sep 13, 2012
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last modified
Sep 13, 2012 09:59 AM
Lowered contig size filtering cutoff from 2k-1 to 2k-10; various improvement to fusions and indel code (see ChangeLog)
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TransABySS 1.3.5
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by
Readman Chiu
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last modified
Sep 13, 2012 09:47 AM
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Trans-ABySS 1.3.5
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Trans-ABySS 1.4.8
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by
Readman Chiu
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published
Sep 13, 2013
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last modified
Sep 16, 2013 11:37 AM
Identifies ITD, PTD, and read-throughs, uses qmake for running pipeline in SGE, and more.
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Trans-ABySS
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KLEAT 2.0
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by
Readman Chiu
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published
Apr 28, 2015
CLEAT has changed its name to KLEAT. In version 2.0, KLEAT is no longer dependent on the Trans-ABySS analysis framework. Instead, a standalone script is provided to run the assembly and alignments. In addition, the input formats to KLEAT have also been modified to adopt the more standard formats of BAM for alignments and GTF for annotation.
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