Canada's Michael Smith Genome Sciences Centre

KLEAT 2.0: by Readman Chiu — published Apr 28, 2015
CLEAT has changed its name to KLEAT. In version 2.0, KLEAT is no longer dependent on the Trans-ABySS analysis framework. Instead, a standalone script is provided to run the assembly and alignments. In addition, the input formats to KLEAT have also been modified to adopt the more standard formats of BAM for alignments and GTF for annotation.
Located in Platforms / … / KLEAT / Releases
KLEAT 2.0: by Readman Chiu — last modified Apr 28, 2015 11:06 AM
Located in Platforms / … / Releases / KLEAT 2.0
PAVFinder: by Readman Chiu — published Aug 11, 2015 — last modified Feb 05, 2016 09:59 AM
Structural variant caller on sequence assembly
Located in Platforms / Bioinformatics / GSC Software Centre
PAVFinder 0.2.0: by Readman Chiu — published Aug 11, 2015
Initial release
Located in Platforms / … / PAVFinder / Releases
PAVFinder 0.4.0: by Readman Chiu — published May 18, 2017
Merge PAVFinder_transcriptome
Located in Platforms / … / PAVFinder / Releases
PAVFinder 0.4.2: by Readman Chiu — published Oct 23, 2017
Changes to improve robustness of tap.py
Located in Platforms / … / PAVFinder / Releases
PAVFinder v0.2.0: by Readman Chiu — last modified Aug 11, 2015 05:00 PM
Located in Platforms / … / Releases / PAVFinder 0.2.0
PAVFinder v0.4.0: by Readman Chiu — last modified May 18, 2017 12:32 PM
Located in Platforms / … / Releases / PAVFinder 0.4.0
PAVFinder_transcriptome: by Readman Chiu — published Oct 18, 2016 — last modified Oct 18, 2016 02:29 PM
Structural and splice variant detection from transcriptome assembly
Located in Platforms / Bioinformatics / GSC Software Centre
PAVFinder_transcriptome v0.3.1: by Readman Chiu — published Oct 18, 2016
First public release
Located in Platforms / … / PAVFinder_transcriptome / Releases

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