Existing and upcoming releases for this project.

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Experimental Releases

Stable Releases

SSAKE 4.0 (Jan 20, 2018)
Initial support for linked reads
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SSAKE 3.8.5 (Apr 18, 2017)
Implements targeted de novo assembly. Bug fix (in targeted assembly mode)
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SSAKE 3.8.4 (Jan 01, 2016)
Targeted de novo assembly functionality improvements
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SSAKE 3.8.3 (Jun 09, 2015)
Included tie-breaker option (-q) when determining consensus from equal-coverage bases, useful when the read coverage is very low. The Zaire ebola virus read data (SRR2019530) is now provided for testing SSAKE.
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SSAKE 3.8.2 (Apr 25, 2014)
This release includes an option (-j) for adjusting the kmer length when running SSAKE in TASR mode (-s). A recent Illumina MiSeq dataset is available for testing SSAKE's performance:
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