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Downloadable File source code
by Ben Vandervalk — last modified Nov 09, 2018 11:47 AM
Located in Platforms / … / Releases / ABySS 2.1.4
Software Release ABySS 2.1.4
by Ben Vandervalk — published Nov 09, 2018
This release provides major improvements to Bloom filter assembly contiguity and correctness. Bloom filter assemblies now have equivalent scaffold contiguity and better correctness than MPI assemblies of the same data, while still requiring less than 1/10th of the memory. On human, Bloom filter assembly times are still a few hours longer than MPI assemblies (e.g. 17 hours vs. 13 hours, using 48 threads).
Located in Platforms / … / ABySS / Releases
Downloadable File source code
by Ben Vandervalk — last modified Nov 05, 2018 10:58 AM
Located in Platforms / … / Releases / ABySS 2.1.3
Software Release ABySS 2.1.3
by Ben Vandervalk — published Nov 05, 2018
This release fixes a SAM-formatting bug that broke the ABySS-LR pipeline (Tigmint/ARCS).
Located in Platforms / … / ABySS / Releases
Software Release ABySS 2.1.2
by Ben Vandervalk — published Oct 24, 2018 — last modified Oct 24, 2018 12:38 PM
This release improves scaffold N50 on human by ~10%, due to implementation of a new `--median` option for `DistanceEst` (thanks to @lcoombe!). This release also adds a new `--max-cost` option for `konnector` and `abyss-sealer` that curbs indeterminately long running times, particularly at low k values.
Located in Platforms / … / ABySS / Releases
Downloadable File source code
by Ben Vandervalk — last modified Oct 24, 2018 12:32 PM
Located in Platforms / … / Releases / ABySS 2.1.2
Software Release ABySS 2.1.1
by Ben Vandervalk — published Sep 11, 2018
This release provides bug fixes and modest improvements to Bloom filter assembly contiguity/correctness. Parallelization of Sealer has also been improved, thanks to contributions by @schutzekatze.
Located in Platforms / … / ABySS / Releases
Downloadable File source code
by Ben Vandervalk — last modified Sep 11, 2018 02:11 PM
Located in Platforms / … / Releases / ABySS 2.1.1
Externally Hosted File source code
by Ben Vandervalk — last modified Apr 16, 2018 09:25 AM
Located in Platforms / … / Releases / ABySS 2.1.0
Software Release ABySS 2.1.0
by Ben Vandervalk — published Apr 13, 2018
This release adds support for misassembly correction and scaffolding using linked reads, using Tigmint and ARCS. (Tigmint and ARCS must be installed separately.) In addition, simultaneous optimization of `s` (seed length) and `n` (min supporting read pairs / Chromium barcodes) is now supported during scaffolding.
Located in Platforms / … / ABySS / Releases
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