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Software Release ABySS 1.0.2
by Shaun Jackman — published Nov 21, 2008 — last modified Jul 23, 2010 04:12 PM
Include a parallel binary compiled for OpenMPI.
Located in Platforms / … / ABySS / Releases
Software Release ABySS 1.0.3
by Shaun Jackman — published Feb 05, 2009 — last modified Jul 23, 2010 04:14 PM
Tidy up the ends of blunt contigs. Merge blunt contigs that are connected by pairs and overlap.
Located in Platforms / … / ABySS / Releases
Software Release ABySS 1.0.4
by Shaun Jackman — published Mar 09, 2009 — last modified Jul 23, 2010 04:15 PM
Remove the need to specify the parameters -e,--erode and -b,--bubbles. Use less disk space by using pipes to avoid intermediate files. Many improvements to the paired-end algorithm.
Located in Platforms / … / ABySS / Releases
Software Release ABySS 1.0.5
by Shaun Jackman — published Mar 11, 2009 — last modified Mar 11, 2009 11:43 AM
Portability fixes.
Located in Platforms / … / ABySS / Releases
Software Release ABySS 1.0.6
by Shaun Jackman — published Mar 25, 2009 — last modified Mar 25, 2009 10:41 AM
Fix a race condition in the erosion algorithm.
Located in Platforms / … / ABySS / Releases
Software Release ABySS 1.0.7
by Shaun Jackman — published Mar 31, 2009 — last modified Mar 31, 2009 04:16 PM
The parallel MPI assembler is now deterministic; it will produce the same result every time.
Located in Platforms / … / ABySS / Releases
Software Release ABySS 1.0.8
by Shaun Jackman — published Apr 02, 2009 — last modified Apr 02, 2009 02:58 PM
Fix the bug causing the error Assertion `marked == split' failed.
Located in Platforms / … / ABySS / Releases
Software Release ABySS 1.0.9
by Shaun Jackman — published May 15, 2009 — last modified May 15, 2009 02:45 PM
Significantly reduce the memory usage of KAligner and ParseAligns. abyss-pe can read multiple input files and read FASTA or FASTQ files.
Located in Platforms / … / ABySS / Releases
Software Release ABySS 1.0.10
by Shaun Jackman — published Jun 18, 2009
ParseAligns is improved to handle any number of reads as long as mate pairs are found interleaved in the same file. Merge overlapping paired-end contigs that were previously being missed in some situations. Number paired-end contigs so that their IDs do not overlap with the single-end contigs.
Located in Platforms / … / ABySS / Releases
Software Release ABySS 1.0.11
by Shaun Jackman — published Jul 21, 2009
Assemble colour-space reads. Read files in qseq format. KAligner is multithreaded. Integrate with Sun Grid Engine (SGE). Prevent misassemblies mediated by tandem segmental duplications.
Located in Platforms / … / ABySS / Releases
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