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Software Release DIDA 1.0.1
by Ben Vandervalk — published Apr 24, 2015
This version introduces compression of intermediate files to reduce disk space requirements.
Located in Platforms / … / DIDA / Releases
Software Release Sealer 1.9.0
by Ben Vandervalk — published Nov 03, 2015
First official release of Sealer following publication.
Located in Platforms / … / Sealer / Releases
Software Release Konnector 2.0
by Ben Vandervalk — published Nov 03, 2015
First release following publication of Konnector 2.0
Located in Platforms / … / Konnector / Releases
Software Release ABySS 1.9.0
by Ben Vandervalk — published May 29, 2015 — last modified May 29, 2015 03:55 PM
This release introduces a new paired de Bruijn graph mode for assembly. In paired de Bruijn graph mode, ordinary k-mers are replaced by k-mer pairs, where each k-mer pair is separated by a fixed-size gap. The primary advantage of paired de Bruijn graph mode is that the span of a k-mer pair can be arbitrarily wide without consuming additional memory, and thus provides improved scalability for assemblies of long sequencing reads. This release also introduces a new tool called Sealer for closing scaffold gaps, new Konnector functionality for producing long pseudo-reads, and support for the DIDA (Distributed Indexing Disptached Alignment) parallel alignment framework.
Located in Platforms / … / ABySS / Releases
Externally Hosted File Source code
by Ben Vandervalk — last modified May 29, 2015 03:52 PM
Located in Platforms / … / Releases / ABySS 1.9.0
Software Release ABySS 2.0.1
by Ben Vandervalk — published Sep 14, 2016
This release resolves some licensing issues with that were pointed out in 2.0.0. As of 2.0.1, ABySS is now available under a standard GPL-3 license, and the libraries included under `lib/rolling-hash` and `lib/bloomfilter` are now also licensed under GPL-3. For alternative licensing terms, please contact Patrick Rebstein (prebstein at bccancer.bc.ca).
Located in Platforms / … / ABySS / Releases
Downloadable File abyss-2.0.1.tar.gz
by Ben Vandervalk — last modified Sep 14, 2016 03:24 PM
Located in Platforms / … / Releases / ABySS 2.0.1
Software Release ABySS 2.1.1
by Ben Vandervalk — published Sep 11, 2018
This release provides bug fixes and modest improvements to Bloom filter assembly contiguity/correctness. Parallelization of Sealer has also been improved, thanks to contributions by @schutzekatze.
Located in Platforms / … / ABySS / Releases
Downloadable File source code
by Ben Vandervalk — last modified Sep 11, 2018 02:11 PM
Located in Platforms / … / Releases / ABySS 2.1.1
Software Release ABySS 2.1.2
by Ben Vandervalk — published Oct 24, 2018 — last modified Oct 24, 2018 12:38 PM
This release improves scaffold N50 on human by ~10%, due to implementation of a new `--median` option for `DistanceEst` (thanks to @lcoombe!). This release also adds a new `--max-cost` option for `konnector` and `abyss-sealer` that curbs indeterminately long running times, particularly at low k values.
Located in Platforms / … / ABySS / Releases
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