PAVFinder
Structural variant caller on sequence assembly
Project Description
PAVFinder (Post Assembly VariantFinder) is a Python package that detects genomic rearrangements from whole-genome shotgun assemblies and transcriptomic events such as gene fusions, internal tandem duplications, partial tandem duplications, and novel splice variants from RNA-seq assemblies.
PAVFinder is intended to replace the existing analysis suite of the trans-ABySS pipeline v1.4.8.
Current Release
PAVFinder 0.4.2
Released Oct 23, 2017
Changes to improve robustness of tap.py
More about this release…
-
Get
PAVFinder
for
Linux
- TAP v0.4.2
All Releases
| Version | Released | Description | Compatibility | Licenses | Status |
|---|---|---|---|---|---|
| 0.4.2 | Oct 23, 2017 | Changes to improve robustness of tap.py More about this release… | BCCA (academic use) | final | |
| 0.4.0 | May 18, 2017 | Merge PAVFinder_transcriptome More about this release… | BCCA (academic use) | final | |
| 0.2.0 | Aug 11, 2015 | Initial release More about this release… | BCCA (academic use) | final |
