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GSC Software Centre

Featured Projects


A de novo, parallel, paired-end sequence assembler that is designed for short reads. The single-processor version is useful for assembling genomes up to 100 Mbases in size. The parallel version is implemented using MPI and is capable of assembling larger genomes.


A Python command-line tool for the post-processing of structural variant calls.

Raw Quant

A Python package for extracting scan meta data and quantification values from Thermo .raw files.


de novo assembly of RNA-Seq data using ABySS.

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