ABySS 1.0.16 (Nov 13, 2009)

ABySS

Improve the performance and memory usage of KAligner and AdjList, particularly for very large data sets.

For additional information about this project, please visit the overview page .

Available downloads

Source

For all platforms (249 kB)

Release Notes

State Final release
License AFL

2009-11-13 Shaun Jackman <sjackman@bcgsc.ca>

* Release version 1.0.16.
* Improve the performance and memory usage of KAligner and
AdjList, particularly for very large data sets.

KAligner:
* Improve memory usage when maxk is 32 or 96. No change when maxk
is the default 64.
* New option, -i, --ignore-multimap. Ignore any duplicate k-mer in
the target sequence. Thanks to Tony Raymond.

AdjList:
* Improve performance for very large data sets.

ParseAligns:
* For reads whose ID begins with `SRR', expect that the forward
and reverse read have identical ID and no suffix, such as
/1 and /2.