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You are here: Home / Platforms / Bioinformatics / GSC Software Centre / Barnacle / Releases / Barnacle 1.0.3 (Beta release 3)

Barnacle 1.0.3 (Beta release 3) (Sep 23, 2013)

This is not a final release. Experimental releases should only be used for testing and development. Do not use these on production sites, and make sure you have proper backups before installing.

Update to increase compatibility with newer versions of Trans-ABySS (1.4.x), primarily allowing SAM-formatted contig-to-genome alignment files, and improvements to ITD detection.

For additional information about this project, please visit the overview page .

Available downloads


For Linux (461.0 KB)

Release Notes

State Beta release
License BCCA (academic use)
Release Manager Lucas Swanson

This update increase compatibility with newer versions of Trans-ABySS (1.4.x). It allows SAM-formatted contig-to-genome alignment files. Improvements have been made to ITD and PTD detection, especially when using GMAP for the contig-to-genome alignments (which is the default for Trans-ABySS starting with version 1.4.4).

Change log

Major changes since version 1.0.0
- add parser for SAM-formatted contig-to-genome alignment files
- improve ITD and PTD sensitivity (esp. with GMAP contig-to-genome alignments)