SSAKE 3.8.4 (Jan 01, 2016)

SSAKE

Targeted de novo assembly functionality improvements

For additional information about this project, please visit the overview page .

Available downloads

ssake_v3-8-4.tar.gz

For all platforms (1.5 MB)

Release Notes

State Final release
License GPL
Release Manager Rene Warren

Improvements to the targeted assembly functionality, recruiting whole read pairs for de novo assembly when at least one read has a k-mer match. This has the potential to extend the reconstructed contigs by up to twice the median library fragment length (upstream + downstream) of the target sequence, when running SSAKE in targeted de novo assembly mode -s and -i 1.