SSAKE 4.0 (Jan 20, 2018)


Initial support for linked reads

For additional information about this project, please visit the overview page .

Available downloads


For all platforms (1.3 MB)

Release Notes

State Final release
License GPLv3
Release Manager Rene Warren
-Initial support for linked reads, such as those produced by the 10x Genomics Chromium technology -Linked reads are supplied in the original SSAKE format, but the barcode information is indicated by sequence following a single underscore "_" -Added a C. elegans linked read data assembly script in the test folder -Scaffolding options consistent with that of the LINKS scaffolder -SSAKE no longer sorts by/prioritizes high multiplicity reads for assembly -Streamlined file names -Deprecated force-fill gap feature -Bug fixes