Trans-ABySS 0.2 (May 26, 2010)

Addition of scripts for novel poly-adenylation site detection and novel anomalous contig detection.

For additional information about this project, please visit the overview page .

Available downloads

trans-abyss_0.2.tar.gz

For all platforms (87.5 MB)

Release Notes

Addition of scripts for novel poly-adenylation site detection and novel anomalous contig detection.

Change log

1. added scripts for detecting novel polyadenylation sites (analysis/poly_a)
2. added scripts for detecting local inversions, fusions, etc (analysis/anomalous_contig_finder)
3. fixed bug on detecting/reporting novel transcript (analysis/model_matcher.py)
4. human and mouse gene model files from UCSC provided (gene_models/)
5. added support of outputting Exonerate alignments after filtering is performed on initial Exonerate alignments