ABySS 1.2.4 (Oct 14, 2010)

ABySS

Replace gaps of Ns that span a region of ambiguous sequence with a consensus sequence of the possible sequences that fill the gap. The consensus sequence uses IUPAC-IUB ambiguity codes.

For additional information about this project, please visit the overview page .

Available downloads

Source

For all platforms (415 kB)

Release Notes

State Final release
License BCCA (academic use)

2010-10-13  Shaun Jackman  <sjackman@bcgsc.ca>

    * Release version 1.2.4.

    ABYSS-P:
    * Fix the bug causing the error
    Unexpected sequence extension message.

    KAligner:
    * Reduce the amount of memory used by KAligner.

    PathConsensus:
    * New program. Replace gaps of Ns that span a region of ambiguous
    sequence with a consensus sequence of the possible sequences that
    fill the gap. By default a minimum 90% identity is required. This
    default can be changed with the parameter, p. The consensus
    sequence uses IUPAC-IUB ambiguity codes. DIALIGN-TX is used for
    the multiple sequence alignment.

    PathOverlap:
    * Fix the bug causing the error
    Assertion `back(paths, u) == front(paths, v)' failed.