ABySS 1.3.6 (Jul 31, 2013)

ABYSS and ABYSS-P are now ~20% faster. Fixed many portability issues and bugs, and improved some error messages.

For additional information about this project, please visit the overview page .

Available downloads

Source

For all platforms (663.0 KB)

Test input data (paired end reads)

For all platforms (1.4 MB)

Release Notes

2013-07-15 Anthony Raymond <traymond@bcgsc.ca>

* Release version 1.3.6
* Improved documentation for GitHub devs.
* ABYSS-P performance improvement.
* Various portability and bug fixes.

abyss-mergepairs:
* Fix program name.

abyss-fac:
* New option --exp-size to give the expected genome size needed
for NG50 calculation.
* New option --count-ambig include ambiguities in calculations.

ABYSS/ABYSS-P:
* Performance improvement. Runtime reduced by ~20%.
* Fix support for MPICH.

abyss-map:
* No longer require POPCNT instruction.
* New option --order to force output order the same as input.

abyss-filtergraph:
* New option --remove to remove specified contigs from graph.

PopBubbles:
* Bug fix. Setting branches > 2 will now work.

abyss-fixmate:
* Improved error when first and second read IDs do not match.
* New option --cov to compute and store the physical coverage in
a Wiggle file.

AdjIO:
* Bug fix for non-GCC compilers.