Anchor 0.3.0 (Release candidate) (Oct 04, 2011)

This is not a final release. Experimental releases should only be used for testing and development. Do not use these on production sites, and make sure you have proper backups before installing.

Re-write of Anchor to correspond to ABySS 1.3.0

For additional information about this project, please visit the overview page .

Available downloads

Anchor 0.3.0

For all platforms (189.8 KB)

Release Notes

- Removed dependencies on Ruffus and Picard
- Changed cluster job setup to make it more adaptable to other (SGE) clusters
- Added several new parameters for controlling DAssembler from the main script
- Made workflow options simpler
- Added new -r, -t, and -f options for removing complex fasta headers (that break bwa), trimming short contigs, and filtering exactly-matching contigs
- New log-file and output-reporting scripts
- Various bug-fixes and improvements to the snp-calling and gap-filling modules